{
  "_id": "6a214291cd65a98ecbd2ab2d",
  "Package": "ra4bayesmeta",
  "Type": "Package",
  "Title": "Reference Analysis for Bayesian Meta-Analysis",
  "Version": "1.0-8",
  "Date": "2023-10-06",
  "Authors@R": "c(person(\"Manuela\", \"Ott\", role = c(\"aut\", \"cre\"),\nemail = \"manuela.c.ott@gmail.com\"),\nperson(\"Malgorzata\", \"Roos\", role = \"aut\")\n)",
  "Author": "Manuela Ott [aut, cre], Malgorzata Roos [aut]",
  "Maintainer": "Manuela Ott <manuela.c.ott@gmail.com>",
  "Description": "Functionality for performing a principled reference\nanalysis in the Bayesian normal-normal hierarchical model used\nfor Bayesian meta-analysis, as described in Ott, Plummer and\nRoos (2021) <doi:10.1002/sim.9076>. Computes a reference\nposterior, induced by a minimally informative improper\nreference prior for the between-study (heterogeneity) standard\ndeviation. Determines additional proper anti-conservative (and\nconservative) prior benchmarks. Includes functions for\nreference analyses at both the posterior and the prior level,\nwhich, given the data, quantify the informativeness of a\nheterogeneity prior of interest relative to the minimally\ninformative reference prior and the proper prior benchmarks.\nThe functions operate on data sets which are compatible with\nthe 'bayesmeta' package.",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 09:12:32 UTC",
    "User": "root"
  },
  "Repository": "https://manuelaott.r-universe.dev",
  "Date/Publication": "2023-10-06 22:30:37 UTC",
  "RemoteUrl": "https://github.com/cran/ra4bayesmeta",
  "RemoteRef": "HEAD",
  "RemoteSha": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
  "MD5sum": "a25d54072e8c085a7dd1af883959a018",
  "_user": "manuelaott",
  "_type": "src",
  "_file": "ra4bayesmeta_1.0-8.tar.gz",
  "_fileid": "743d83210f8d8737cb0e4f08b6a0bcd96fccd9139f8388abbaf3f40d89f22df8",
  "_filesize": 344963,
  "_sha256": "743d83210f8d8737cb0e4f08b6a0bcd96fccd9139f8388abbaf3f40d89f22df8",
  "_created": "2026-06-04T09:12:32.000Z",
  "_published": "2026-06-04T09:17:05.978Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79487081364,
      "time": 117,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7407593470"
    },
    {
      "job": 79487081380,
      "time": 120,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7407594489"
    },
    {
      "job": 79487081329,
      "time": 140,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7407594918"
    },
    {
      "job": 79487081483,
      "time": 165,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7407600999"
    },
    {
      "job": 79486613989,
      "time": 168,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7407552246"
    },
    {
      "job": 79487081542,
      "time": 91,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7407584792"
    },
    {
      "job": 79487081455,
      "time": 95,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7407586142"
    },
    {
      "job": 79487081369,
      "time": 234,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7407635681"
    },
    {
      "job": 79487081340,
      "time": 90,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7407583735"
    }
  ],
  "_buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/ra4bayesmeta",
  "_commit": {
    "id": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
    "author": "Manuela Ott <manuela.c.ott@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0-8\n",
    "time": 1696631437
  },
  "_maintainer": {
    "name": "Manuela Ott",
    "email": "manuela.c.ott@gmail.com",
    "login": "manuelaott",
    "description": "",
    "uuid": 59996364
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "bayesmeta",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "manuelaott",
      "count": 2,
      "uuid": 59996364
    }
  ],
  "_userbio": {
    "uuid": 59996364,
    "type": "user",
    "name": "manuelaott"
  },
  "_downloads": {
    "count": 178,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ra4bayesmeta"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ra4bayesmeta.html",
    "manual.pdf"
  ],
  "_realowner": "manuelaott",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0-7",
      "date": "2021-04-23"
    },
    {
      "version": "1.0-8",
      "date": "2023-10-06"
    }
  ],
  "_exports": [
    "cal_h_dist",
    "dsgc",
    "dsigc",
    "fit_models_RA",
    "fit_models_RA_5bm",
    "H",
    "H_fits",
    "H_normal",
    "m_inf_sgc",
    "M_inf_sigc",
    "m_j_sgc",
    "M_j_sigc",
    "plot_RA",
    "plot_RA_5bm",
    "plot_RA_fits",
    "post_mu_fe",
    "post_RA",
    "post_RA_3bm",
    "post_RA_fits",
    "pri_RA_5bm",
    "pri_RA_fits",
    "sigma_ref"
  ],
  "_datasets": [
    {
      "name": "aa",
      "title": "Auricular acupuncture data",
      "object": "aa",
      "file": "aa.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "f.t",
        "n.t",
        "f.c",
        "n.c",
        "y",
        "sigma"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "aom",
      "title": "Acute otitis media data",
      "object": "aom",
      "file": "aom.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "f.t",
        "n.t",
        "f.c",
        "n.c",
        "y",
        "sigma"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    },
    {
      "name": "rti",
      "title": "Respiratory tract infections data",
      "object": "rti",
      "file": "rti.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "f.t",
        "n.t",
        "f.c",
        "n.c",
        "y",
        "sigma"
      ],
      "rows": 22,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "ra4bayesmeta-package",
      "title": "Reference Analysis for Bayesian Meta-Analysis",
      "topics": [
        "ra4bayesmeta-package"
      ]
    },
    {
      "page": "aa",
      "title": "Auricular acupuncture data",
      "topics": [
        "aa"
      ]
    },
    {
      "page": "aom",
      "title": "Acute otitis media data",
      "topics": [
        "aom"
      ]
    },
    {
      "page": "cal_h_dist",
      "title": "Calibration of the Hellinger distance",
      "topics": [
        "cal_h_dist"
      ]
    },
    {
      "page": "dsgc",
      "title": "Density function of the square-root generalized conventional (SGC) benchmark prior",
      "topics": [
        "dsgc"
      ]
    },
    {
      "page": "dsigc",
      "title": "Density function of the square-root inverse generalized conventional (SIGC) benchmark prior",
      "topics": [
        "dsigc"
      ]
    },
    {
      "page": "fit_models_RA",
      "title": "Model fitting for reference analysis using 2 benchmarks: Posterior inference for benchmark and actual heterogeneity priors",
      "topics": [
        "fit_models_RA"
      ]
    },
    {
      "page": "fit_models_RA_5bm",
      "title": "Model fitting for reference analysis using 5 benchmarks: Posterior inference for benchmark and actual heterogeneity priors",
      "topics": [
        "fit_models_RA_5bm"
      ]
    },
    {
      "page": "H",
      "title": "Hellinger distance between two probability densities",
      "topics": [
        "H"
      ]
    },
    {
      "page": "H_fits",
      "title": "Hellinger distance between marignal posterior densities of two bayesmeta fits",
      "topics": [
        "H_fits"
      ]
    },
    {
      "page": "H_normal",
      "title": "Approximate moment-based Hellinger distance computation between two probability densities",
      "topics": [
        "H_normal"
      ]
    },
    {
      "page": "m_inf_sgc",
      "title": "Optimization function for the SGC(m) prior: Adjust the prior to a target relative latent model complexity (RLMC)",
      "topics": [
        "m_inf_sgc"
      ]
    },
    {
      "page": "M_inf_sigc",
      "title": "Optimization function for the SIGC(M) prior: Adjust the prior to a target relative latent model complexity (RLMC)",
      "topics": [
        "M_inf_sigc"
      ]
    },
    {
      "page": "m_j_sgc",
      "title": "Optimization function for the SGC(m) prior: Approximate Jeffreys reference posterior",
      "topics": [
        "m_j_sgc"
      ]
    },
    {
      "page": "M_j_sigc",
      "title": "Optimization function for the SIGC(m) prior: Approximate Jeffreys reference posterior",
      "topics": [
        "M_j_sigc"
      ]
    },
    {
      "page": "plot_RA",
      "title": "Reference analysis plot based on a data frame using 2 benchmarks: Plot heterogeneity benchmark priors and the corresponding marginal posteriors",
      "topics": [
        "plot_RA"
      ]
    },
    {
      "page": "plot_RA_5bm",
      "title": "Reference analysis plot based on a data frame using 5 benchmarks: Plot heterogeneity benchmark priors and the corresponding marginal posteriors",
      "topics": [
        "plot_RA_5bm"
      ]
    },
    {
      "page": "plot_RA_fits",
      "title": "Reference analysis plot based on bayesmeta fits: Plot heterogeneity benchmark priors and the corresponding marginal posteriors",
      "topics": [
        "plot_RA_fits"
      ]
    },
    {
      "page": "post_mu_fe",
      "title": "Normal posterior for the overall mean parameter in the fixed effects model",
      "topics": [
        "post_mu_fe"
      ]
    },
    {
      "page": "post_RA",
      "title": "Posterior reference analysis based on a data frame using 2 benchmarks",
      "topics": [
        "post_RA"
      ]
    },
    {
      "page": "post_RA_3bm",
      "title": "Posterior reference analysis based on a data frame using 3 benchmarks",
      "topics": [
        "post_RA_3bm"
      ]
    },
    {
      "page": "post_RA_fits",
      "title": "Posterior reference analysis based on bayesmeta fits",
      "topics": [
        "post_RA_fits"
      ]
    },
    {
      "page": "pri_RA_5bm",
      "title": "Prior reference analysis based on a data frame using 5 benchmarks",
      "topics": [
        "pri_RA_5bm"
      ]
    },
    {
      "page": "pri_RA_fits",
      "title": "Prior reference analysis based on bayesmeta fits",
      "topics": [
        "pri_RA_fits"
      ]
    },
    {
      "page": "rti",
      "title": "Respiratory tract infections data",
      "topics": [
        "rti"
      ]
    },
    {
      "page": "sigma_ref",
      "title": "Reference standard deviation",
      "topics": [
        "sigma_ref"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "backports",
    "bayesmeta",
    "checkmate",
    "digest",
    "forestplot",
    "lattice",
    "mathjaxr",
    "Matrix",
    "metadat",
    "metafor",
    "mvtnorm",
    "nlme",
    "numDeriv",
    "pbapply"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "ra4bayesmeta",
  "_universes": [
    "manuelaott"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0-8",
      "date": "2026-06-04T09:14:18.000Z",
      "distro": "noble",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "702f1563d9869194fbfeb94d5ab6360308488462bc66bf59bc1d53f1bef04576",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0-8",
      "date": "2026-06-04T09:14:22.000Z",
      "distro": "noble",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "2ca9bdf18697790c6d1240a2792025663ce7989489075f61ca1064ded8330f4b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0-8",
      "date": "2026-06-04T09:14:33.000Z",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "3b3adcae265b6c2f478c05bbdc8f3659f6bd38ad9ddd26d5bcb0b6efc956aefe",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0-8",
      "date": "2026-06-04T09:14:46.000Z",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "89d6597cff9810a4fbcfcaa52ca02837a38092b926ff76185b7b43ab50c00e29",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0-8",
      "date": "2026-06-04T09:14:22.000Z",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "debc8f30af704183dd462bf52a795874b6ec4a0c7191a5657f3b8785a1128f9b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0-8",
      "date": "2026-06-04T09:13:51.000Z",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "0170e864e704965e353823e6423fa2934ccc82b64b258b07ee90493f102403e3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0-8",
      "date": "2026-06-04T09:15:54.000Z",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "455015ceff4883eb71dda4f7c06505bc00b0b8e321891b9f97273707ee557218",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0-8",
      "date": "2026-06-04T09:13:40.000Z",
      "commit": "574555b77fcbcd0cf92eb2df3da3e1e7fac2af05",
      "fileid": "3c4aa1eebc0c26654d4b68ad001103a662f52ce172369e6f69367f20d325b78c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/manuelaott/actions/runs/26942317331"
    }
  ]
}